Genomewide association studies: history, rationale, and prospects for psychiatric disorders.

Psychiatric GWAS Consortium Coordinating Committee, Cichon S, Craddock N, Daly M, Faraone SV, Gejman PV, Kelsoe J, Lehner T, Levinson DF, Moran A, Sklar P, Sullivan PF: Genomewide association studies: history, rationale, and prospects for psychiatric disorders. Amer J Psych 166:540-556, 2009. PMID 19339359. PMC3894622.

Common variants at ten loci modulate the QT interval duration in the QTSCD study.

Pfeufer A, Sanna S, Arking DE, Müller M, Gateva V, Fuchsberger C, Ehret GB, Orrú M, Pattaro  C, Köttgen A, Perz S, Usala G, Barbalic M, Li M, Pütz B, Scuteri A, Prineas RJ, Sinner MF, Gieger C, Najjar SS, Kao WH, Mühleisen TW, Dei M, Happle C, Möhlenkamp S, Crisponi L, Erbel R, Jöckel KH, Naitza S, Steinbeck G, Marroni F, Hicks AA, Lakatta E, Müller-Myhsok B, Pramstaller PP, Wichmann HE, Schlessinger D, Boerwinkle E, Meitinger T, Uda M, Coresh J, Kääb S, Abecasis GR, Chakravarti A: Common variants at ten loci modulate the QT interval duration in the QTSCD study. Nat Genet 41:407-414, 2009. PMID 19305409. PMC2976045.

Hybrids of aneuploid human cancer cells permit complementation of simple and complex cancer defects.

Dezentje DA, Arking DE, Kortenhorst MSQ, West K, Chakravarti A, Kern SE: Hybrids of aneuploid human cancer cells permit complementation of simple and complex cancer defects. Cancer Biol Therapy 8:347-355, 2009. PMID 19305140. PMC2749964.

Interaction between a chromosome 10 RET enhancer and chromosome 21 in the Down syndrome-Hirschsprung disease association.

Arnold S, Pelet A, Amiel J, Borrego S, Hofstra R, Tam P, Ceccherini I, Lyonnet S, Sherman S, Chakravarti A: Interaction between a chromosome 10 RET enhancer and chromosome 21 in the Down syndrome-Hirschsprung disease association. Hum Mutat 30:771-775, 2009. PMID 19306335. PMC2779545.

Genetic Variations in NOS1AP are Associated with Sudden Cardiac Death in U.S. White Community Based Populations.

Kao WH, Arking DE, Post W, Rea TD, Sotoodehnia N, Prineas RJ, Bishe B, Doan BQ, Boerwinkle E, Psaty BM, Tomaselli G, Coresh J, Siscovick DS, Márban E, Spooner PM, Burke GL, Chakravarti A: Genetic Variations in NOS1AP are Associated with Sudden Cardiac Death in U.S. White Community Based Populations. Circulation 119:940-951, 2009. PMID 19204306. PMC2782762.

Multiple Independent Genetic Factors at NOS1AP modulate the QT interval in a Multi-Ethnic Population.

Arking DE, Khera A, Xing C, Kao WH, Post W, Boerwinkle E, Chakravarti A: Multiple Independent Genetic Factors at NOS1AP modulate the QT interval in a Multi-Ethnic Population. PLoS One 4:e4333, 2009. PMID 19180230. PMC2628730.

Whole-genome association study identifies STK39 as a novel hypertension susceptibility gene.

Wang Y, O’Connell JR, McArdle PF, Wade JB, Dorff SE, Shah SJ, Shi X, Pan L, Rampersaud E, Shen H, Kim JD, Subramanya AR, Steinle NI, Parsa A, Ober CC, Welling PA, Chakravarti A, Weder AB, Cooper RS, Mitchell BD, Shuldiner AR, Chang Y-P C: Whole-genome association study identifies STK39 as a novel hypertension susceptibility gene. Proc Natl Acad Sci (USA) 106:226-231, 2009. PMID 19114657. PMC2629209.

Estimating Genome- Wide Copy Number Using Allele-Specific Mixture Models.

Wang W, Carvalho B, Miller ND, Pevsner J, Chakravarti A, Irizarry RA: Estimating Genome- Wide Copy Number Using Allele-Specific Mixture Models. J Comput Biol 15:857-866, 2008. PMID 18707534. PMC2612042.

Replication of the Wellcome Trust genome-wide association study of essential hypertension: the Family Blood Pressure Program.

Ehret GB, Morrison AC, O’Connor AA, Grove ML, Baird L, Schwander K, Weder A, Cooper RS, Rao DC, Hunt SC, Boerwinkle E, Chakravarti A: Replication of the Wellcome Trust genome-wide association study of essential hypertension: the Family Blood Pressure Program. Eur J Hum Genet 16:1507-1511, 2008. PMID 18523456. PMC2585612.

Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays.

Lin S, Carvalho B, Cutler DJ, Arking DE, Chakravarti A, Irizarry RA: Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays. Genome Biol 9(4):R63, 2008. PMID 18387188. PMC2643934.